Difference between revisions of "CellRanger-ARC"
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| − | [[Category:Software]][[Category:Biology | + | [[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|CellRanger-ARC}} | |{{#vardefine:app|CellRanger-ARC}} | ||
Latest revision as of 18:24, 12 August 2022
Description
The set of analysis pipelines in this suite perform sample demultiplexing, barcode processing, identification of open chromatin regions, and simultaneous counting of transcripts and peak accessibility in single cells. Additionally, the pipelines perform secondary analyses like dimensionality reduction, clustering, differential analysis, and feature linkage between peaks and genes that aid in data interpretation.
Environment Modules
Run module spider CellRanger-ARC to find out what environment modules are available for this application.
System Variables
- HPC_CELLRANGER-ARC_DIR - installation directory