Difference between revisions of "CNVnator"

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(Created page with "Category:SoftwareCategory:BiologyCategory:Genomics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|cnvnator}} |{{#vardefine:url|https://github.com/abyzovlab/CNV...")
 
 
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<!--Modules-->
 
<!--Modules-->
==Required Modules==
+
==Environment Modules==
 
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
===Serial===
 
* gcc/5.2.0
 
* {{#var:app}}
 
<!--
 
===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
* intel
 
* openmpi
 
* {{#var:app}}
 
-->
 
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
+
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==

Latest revision as of 15:34, 10 June 2022

Description

cnvnator website  

A tool for CNV discovery and genotyping from depth-of-coverage by mapped reads.

Environment Modules

Run module spider cnvnator to find out what environment modules are available for this application.

System Variables

  • HPC_CNVNATOR_DIR - installation directory




Citation

If you publish research that uses cnvnator you have to cite it as follows:

Genome Res. 2011 Jun;21(6):974-84. doi: 10.1101/gr.114876.110.