CNVkit

From UFRC
Revision as of 21:06, 6 December 2019 by Moskalenko (talk | contribs) (Text replacement - "#uppercase" to "uc")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigation Jump to search

Description

cnvkit website  

A command-line toolkit and Python library for detecting copy number variants and alterations genome-wide from targeted DNA sequencing.

Required Modules

Serial

  • gcc/5.2.0
  • cnvkit

System Variables

  • HPC_CNVKIT_DIR - installation directory
  • HPC_CNVKIT_BIN - executable directory