Difference between revisions of "CNVkit"

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m (Text replacement - "#uppercase" to "uc")
 
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[[Category:Software]]
+
[[Category:Software]][[Category:Phylogenetics]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|cnvkit}}
 
|{{#vardefine:app|cnvkit}}
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<!--Modules-->
 
<!--Modules-->
==Required Modules==
+
==Environment Modules==
 
+
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
===Serial===
 
* gcc/5.2.0
 
* {{#var:app}}
 
<!--
 
===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
* intel
 
* openmpi
 
* {{#var:app}}
 
-->
 
 
==System Variables==
 
==System Variables==
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory

Latest revision as of 13:50, 15 August 2022

Description

cnvkit website  

A command-line toolkit and Python library for detecting copy number variants and alterations genome-wide from targeted DNA sequencing.

Environment Modules

Run module spider cnvkit to find out what environment modules are available for this application.

System Variables

  • HPC_CNVKIT_DIR - installation directory
  • HPC_CNVKIT_BIN - executable directory