Difference between revisions of "CLIPper"

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[[Category:Software]][[Category:Biology]][[Category:Sequencing]]
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[[Category:Software]][[Category:Phylogenetics]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|clipper}}
 
|{{#vardefine:app|clipper}}
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<!--Modules-->
 
<!--Modules-->
==Required Modules==
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==Environment Modules==
 +
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
 +
==System Variables==
 +
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 +
* HPC_{{uc:{{#var:app}}}}_BIN - executable directory
  
===Serial===
 
* {{#var:app}}
 
<!--
 
===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
* intel
 
* openmpi
 
* {{#var:app}}
 
-->
 
==System Variables==
 
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
 
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==

Latest revision as of 13:44, 15 August 2022

Description

clipper website  

CLIPper - CLIP peak enrichment recognition

A tool to detect CLIP-seq peaks.

Environment Modules

Run module spider clipper to find out what environment modules are available for this application.

System Variables

  • HPC_CLIPPER_DIR - installation directory
  • HPC_CLIPPER_BIN - executable directory




Citation

If you publish research that uses clipper you have to cite it as follows:

Lovci et. al. Rbfox proteins regulate alternative mRNA splicing through evolutionarily conserved RNA bridges. Nat Struct Mol Biol. 2013 Dec;20(12):1434-42. doi: 10.1038/nsmb.2699. Epub 2013 Nov 10.