Difference between revisions of "CLIPper"
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory | ||
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{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
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If you publish research that uses {{#var:app}} you have to cite it as follows: | If you publish research that uses {{#var:app}} you have to cite it as follows: | ||
| − | [Lovci et. al. Rbfox proteins regulate alternative mRNA splicing through evolutionarily conserved RNA bridges. Nat Struct Mol Biol. 2013 Dec;20(12):1434-42. doi: 10.1038/nsmb.2699. Epub 2013 Nov 10.] | + | [http://www.ncbi.nlm.nih.gov/pubmed/24213538 Lovci et. al. Rbfox proteins regulate alternative mRNA splicing through evolutionarily conserved RNA bridges. Nat Struct Mol Biol. 2013 Dec;20(12):1434-42. doi: 10.1038/nsmb.2699. Epub 2013 Nov 10.] |
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Revision as of 20:09, 2 March 2021
Description
CLIPper - CLIP peak enrichment recognition
A tool to detect CLIP-seq peaks.
Required Modules
Serial
- clipper
System Variables
- HPC_CLIPPER_DIR - installation directory
- HPC_CLIPPER_BIN - executable directory
Citation
If you publish research that uses clipper you have to cite it as follows: