Difference between revisions of "CLARK"

From UFRC
Jump to navigation Jump to search
(Created page with "Category:SoftwareCategory:BiologyCategory:Genomics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|clark}} |{{#vardefine:url|http://clark.cs.ucr.edu/}} <!--CONF...")
 
 
(One intermediate revision by one other user not shown)
Line 22: Line 22:
  
 
<!--Modules-->
 
<!--Modules-->
==Required Modules==
+
==Environment Modules==
 
+
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
===Serial===
 
* {{#var:app}}
 
<!--
 
===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
* intel
 
* openmpi
 
* {{#var:app}}
 
-->
 
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
+
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==

Latest revision as of 16:28, 10 June 2022

Description

clark website  

CLARK: Fast and accurate classification of metagenomic and genomic sequences using discriminative k-mers


Environment Modules

Run module spider clark to find out what environment modules are available for this application.

System Variables

  • HPC_CLARK_DIR - installation directory




Citation

If you publish research that uses clark you have to cite it as follows:

Ounit R, Wanamaker S, Close TJ, Lonardi S, CLARK: fast and accurate classification of metagenomic and genomic sequences using discriminative k-mers BMC Genomics 2015, 16:236.