Difference between revisions of "CIRCexplorer2"

From UFRC
Jump to navigation Jump to search
(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|circexplorer}} |{{#vardefine:url|https://github.com/YangLab/CIRCexplorer2}}...")
 
m (Text replacement - "#uppercase" to "uc")
 
Line 24: Line 24:
 
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
 
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
+
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
* HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory
+
* HPC_{{uc:{{#var:app}}}}_BIN - executable directory
  
 
<!--Configuration-->
 
<!--Configuration-->

Latest revision as of 21:03, 6 December 2019

Description

circexplorer website  

CIRCexplorer2 is the successor of CIRCexplorer with plenty of new features to facilitate circular RNA identification and characterization.

Environment Modules

Run module spider circexplorer to find out what environment modules are available for this application.

System Variables

  • HPC_CIRCEXPLORER_DIR - installation directory
  • HPC_CIRCEXPLORER_BIN - executable directory




Citation

If you publish research that uses circexplorer you have to cite it as follows:

Zhang XO*, Dong R*, Zhang Y*, Zhang JL, Luo Z, Zhang J, Chen LL#, Yang L#. Diverse alternative back-splicing and alternative splicing landscape of circular RNAs. Genome Res, 2016, 26:1277-1287