Difference between revisions of "CDNA Cupcake"

From UFRC
Jump to navigation Jump to search
(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|cdnacupcake}} |{{#vardefine:url|https://github.com/Magdoll/cDNA_Cupcake}} <!...")
 
 
Line 1: Line 1:
[[Category:Software]][[Category:Phylogenetics]]
+
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|cdnacupcake}}
 
|{{#vardefine:app|cdnacupcake}}

Latest revision as of 13:24, 15 August 2022

Description

cdnacupcake website  

cDNA_Cupcake is a miscellaneous collection of Python and R scripts used for analyzing sequencing data. Most of the scripts only require Biopython. For scripts that require additional libraries, it will be specified in documentation.

Environment Modules

Run module spider cdnacupcake to find out what environment modules are available for this application.

System Variables

  • HPC_CDNACUPCAKE_DIR - installation directory
  • HPC_CDNACUPCAKE_BIN - executable directory