CAP3 is a sequence assembly program. See documentation at capdoc site.
Intel processor optimized versions of cap3 and formcon are installed at HPC.
Opteron optimized versions of these binaries are named cap3-opteron and formcon-opteron.
In addition, pcap binaries are also provided.
Running the application using modules
To use cap3 with the environment modules system at HPC the following commands are available:
Get module information for cap3:
$module spider cap3
Load the default application module:
$module load cap3
The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:
- HPC_CAP3_DIR - directory where cap3 is located.
- HPC_CAP3_BIN - location of the CAP3 executables directory
- HPC_CAP3_DOC - location of the CAP3 docs directory
- HPC_CAP3_EXAMPLE - location of the CAP3 examples directory