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c-wap website  

C-WAP is a bash-based bioinformatics pipeline for the analysis of either long-read (ONT or PacBio) or short-read (Illumina) whole genome sequencing data of DNA extracted from wastewater. It was developed for SARS-CoV2 and its variants.

Environment Modules

Run module spider c-wap to find out what environment modules are available for this application.

System Variables

  • HPC_C-WAP_DIR - installation directory
  • HPC_C-WAP_BIN - executable directory
  • KRAKEN2_DEFAULT_DB - database directory