C-wap
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Description
C-WAP is a bash-based bioinformatics pipeline for the analysis of either long-read (ONT or PacBio) or short-read (Illumina) whole genome sequencing data of DNA extracted from wastewater. It was developed for SARS-CoV2 and its variants.
Environment Modules
Run module spider c-wap to find out what environment modules are available for this application.
System Variables
- HPC_C-WAP_DIR - installation directory
- HPC_C-WAP_BIN - executable directory
- KRAKEN2_DEFAULT_DB - database directory