Difference between revisions of "Bsmap"
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Moskalenko (talk | contribs) (Created page with "Category:SoftwareCategory:BioinformaticsCategory:NGSCategory:Methylation {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|bsmap}} |{{#vardefine:url|https://c...") |
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Revision as of 02:34, 28 October 2014
Description
BSMAP is a short reads mapping software for bisulfite sequencing reads. Bisulfite treatment converts unmethylated Cytosines into Uracils (sequenced as Thymine) and leave methylated Cytosines unchanged, hence provides a way to study DNA cytosine methylation at single nucleotide resolution. BSMAP aligns the Ts in the reads to both Cs and Ts in the reference.
Required Modules
Serial
- bsmap
System Variables
- HPC_{{#uppercase:bsmap}}_DIR