Difference between revisions of "BrainIAK"
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[[Category:Software]][[Category:Imaging]] | [[Category:Software]][[Category:Imaging]] | ||
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
| − | |{{#vardefine:app| | + | |{{#vardefine:app|brainiak}} |
|{{#vardefine:url|https://github.com/brainiak/brainiak}} | |{{#vardefine:url|https://github.com/brainiak/brainiak}} | ||
<!--CONFIGURATION: OPTIONAL (|1}} means it's ON)--> | <!--CONFIGURATION: OPTIONAL (|1}} means it's ON)--> | ||
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|{{#vardefine:testing|}} <!--PROFILING--> | |{{#vardefine:testing|}} <!--PROFILING--> | ||
|{{#vardefine:faq|}} <!--FAQ--> | |{{#vardefine:faq|}} <!--FAQ--> | ||
| − | |{{#vardefine:citation|}} <!--CITATION--> | + | |{{#vardefine:citation|1}} <!--CITATION--> |
|{{#vardefine:installation|}} <!--INSTALLATION--> | |{{#vardefine:installation|}} <!--INSTALLATION--> | ||
|} | |} | ||
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The Brain Imaging Analysis Kit is a package of Python modules useful for neuroscience, primarily focused on functional Magnetic Resonance Imaging (fMRI) analysis. | The Brain Imaging Analysis Kit is a package of Python modules useful for neuroscience, primarily focused on functional Magnetic Resonance Imaging (fMRI) analysis. | ||
| + | |||
The package was originally created by a collaboration between Intel and the Princeton Neuroscience Institute (PNI). | The package was originally created by a collaboration between Intel and the Princeton Neuroscience Institute (PNI). | ||
| − | To reduce verbosity, we may refer to the Brain Imaging Analysis Kit using the BrainIAK abbreviation. Whenever lowercase spelling is used (e.g., Python package name), we use brainiak | + | |
| + | To reduce verbosity, we may refer to the Brain Imaging Analysis Kit using the BrainIAK abbreviation. Whenever lowercase spelling is used (e.g., Python package name), we use brainiak | ||
<!--Modules--> | <!--Modules--> | ||
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==System Variables== | ==System Variables== | ||
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
| + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory | ||
| + | |||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
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If you publish research that uses {{#var:app}} you have to cite it as follows: | If you publish research that uses {{#var:app}} you have to cite it as follows: | ||
| − | + | Please cite BrainIAK in your publications as: "Brain Imaging Analysis Kit, http://brainiak.org." Additionally, if you use RRIDs to identify resources, please mention BrainIAK as "Brain Imaging Analysis Kit, RRID:SCR_014824". Finally, please cite the publications referenced in the documentation of the BrainIAK modules you use, e.g., SRM. | |
| + | |||
|}} | |}} | ||
Latest revision as of 16:19, 27 May 2022
Description
The Brain Imaging Analysis Kit is a package of Python modules useful for neuroscience, primarily focused on functional Magnetic Resonance Imaging (fMRI) analysis.
The package was originally created by a collaboration between Intel and the Princeton Neuroscience Institute (PNI).
To reduce verbosity, we may refer to the Brain Imaging Analysis Kit using the BrainIAK abbreviation. Whenever lowercase spelling is used (e.g., Python package name), we use brainiak
Environment Modules
Run module spider brainiak to find out what environment modules are available for this application.
System Variables
- HPC_BRAINIAK_DIR - installation directory
- HPC_BRAINIAK_BIN - executable directory
Citation
If you publish research that uses brainiak you have to cite it as follows:
Please cite BrainIAK in your publications as: "Brain Imaging Analysis Kit, http://brainiak.org." Additionally, if you use RRIDs to identify resources, please mention BrainIAK as "Brain Imaging Analysis Kit, RRID:SCR_014824". Finally, please cite the publications referenced in the documentation of the BrainIAK modules you use, e.g., SRM.