Difference between revisions of "Booster"

From UFRC
Jump to navigation Jump to search
(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|booster}} |{{#vardefine:url|https://github.com/evolbioinfo/booster}} <!--CON...")
 
m (Text replacement - "#uppercase" to "uc")
 
(3 intermediate revisions by one other user not shown)
Line 10: Line 10:
 
|{{#vardefine:testing|}}      <!--PROFILING-->
 
|{{#vardefine:testing|}}      <!--PROFILING-->
 
|{{#vardefine:faq|}}            <!--FAQ-->
 
|{{#vardefine:faq|}}            <!--FAQ-->
|{{#vardefine:citation|}}      <!--CITATION-->
+
|{{#vardefine:citation|1}}      <!--CITATION-->
 
|{{#vardefine:installation|}} <!--INSTALLATION-->
 
|{{#vardefine:installation|}} <!--INSTALLATION-->
 
|}
 
|}
Line 24: Line 24:
 
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
 
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
+
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
* HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory
+
* HPC_{{uc:{{#var:app}}}}_BIN - executable directory
  
 
<!--Configuration-->
 
<!--Configuration-->
Line 60: Line 60:
 
If you publish research that uses {{#var:app}} you have to cite it as follows:
 
If you publish research that uses {{#var:app}} you have to cite it as follows:
  
[https://www.nature.com/articles/s41586-018-0043-0 Renewing Felsenstein's Phylogenetic Bootstrap in the Era of Big Data
+
[https://www.nature.com/articles/s41586-018-0043-0 Renewing Felsenstein's Phylogenetic Bootstrap in the Era of Big Data F. Lemoine, J.-B. Domelevo-Entfellner, E. Wilkinson, D. Correia, M. Davila Felipe, T. De Oliveira, O. Gascuel. Nature 556, 452-456 (2018)]
F. Lemoine, J.-B. Domelevo-Entfellner, E. Wilkinson, D. Correia, M. Davila Felipe, T. De Oliveira, O. Gascuel.
 
Nature 556, 452-456 (2018)]
 
  
 
|}}
 
|}}

Latest revision as of 21:11, 6 December 2019

Description

booster website  

BOOSTER is a new way of computing bootstrap supports in large phylogenies.

Environment Modules

Run module spider booster to find out what environment modules are available for this application.

System Variables

  • HPC_BOOSTER_DIR - installation directory
  • HPC_BOOSTER_BIN - executable directory




Citation

If you publish research that uses booster you have to cite it as follows:

Renewing Felsenstein's Phylogenetic Bootstrap in the Era of Big Data F. Lemoine, J.-B. Domelevo-Entfellner, E. Wilkinson, D. Correia, M. Davila Felipe, T. De Oliveira, O. Gascuel. Nature 556, 452-456 (2018)