Bismark

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Revision as of 02:02, 10 August 2012 by Moskalenko (talk | contribs) (Text replace - "==Running the application using modules==" to "==Execution Environment and Modules==")
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Description

bismark website  

Bismark is a bisulfite read mapper and methylation caller.

Available versions

  • 0.7.4 (EL6)

Execution Environment and Modules

To use bismark with the environment modules system at HPC the following commands are available:

Get module information for bismark: 

$module spider bismark

Load the default application module: 

$module load bismark

The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:

  • HPC_BISMARK_DIR - directory where bismark is located.





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