Difference between revisions of "Bismark"
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Bismark is a bisulfite read mapper and methylation caller. | Bismark is a bisulfite read mapper and methylation caller. | ||
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==Available versions== | ==Available versions== | ||
Revision as of 01:59, 10 August 2012
Description
Bismark is a bisulfite read mapper and methylation caller.
Available versions
- 0.7.4 (EL6)
Running the application using modules
To use bismark with the environment modules system at HPC the following commands are available:
Get module information for bismark:
$module spider bismark
Load the default application module:
$module load bismark
The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:
- HPC_BISMARK_DIR - directory where bismark is located.