Difference between revisions of "BinSanity"

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<!--Modules-->
 
<!--Modules-->
==Required Modules==
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==Environment Modules==
 
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
===Serial===
 
* {{#var:app}}
 
<!--
 
===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
* intel
 
* openmpi
 
* {{#var:app}}
 
-->
 
 
==System Variables==
 
==System Variables==
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory

Latest revision as of 16:54, 10 June 2022

Description

binsanity website  

Program implements Affinity Propagation to cluster contigs into putative genomes. BinSanity uses contig coverage as an input, while BinSanity-refine incorporates tetranucleotide frequencies, GC content, and an optional input of coverage. All relevant scripts to produce inputs for BinSanity are provided here.

Environment Modules

Run module spider binsanity to find out what environment modules are available for this application.

System Variables

  • HPC_BINSANITY_DIR - installation directory




Citation

If you publish research that uses binsanity you have to cite it as follows:

Graham, E., Heidelberg, J. & Tully, B. BinSanity: Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation. bioRxiv, doi:10.1101/069567 (2016).