Bamtools

From UFRC
Revision as of 21:52, 27 January 2012 by Moskalenko (talk | contribs) (Created page with "__NOTOC__ __NOEDITSECTION__ Category:SoftwareCategory:BioinformaticsCategory:NGS <!-- ######## Template Configuration ######## --> <!--Edit definitions of the variab...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigation Jump to search

Description

{{{name}}} website  
BamTools is a project that provides both a C++ API and a command-line toolkit for reading, writing, and manipulating BAM (genome alignment) files. Template:App Location

Available versions

  • 2.1.0

Running the application using modules

To use test with the environment modules system at HPC the following commands are available:

Get module information for bamtools:

$module spider test

Load the default application module:

$module load test

The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:

  • HPC_TEST_DIR - directory where test is located.
  • HPC_BAMTOOLS_BIN - executable directory
  • HPC_BAMTOOLS_INC - includes directory