Difference between revisions of "Bamtools"

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m (Text replace - "]] {| <!--Main settings - REQUIRED-->" to "]] {|<!--Main settings - REQUIRED-->")
 
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__NOTOC__
 
__NOTOC__
 
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[[Category:Software]][[Category:Bioinformatics]][[Category:NGS]]
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[[Category:Software]][[Category:NGS]][[Category:Biology]][[Category:Sequencing]]
 
{|<!--Main settings - REQUIRED-->
 
{|<!--Main settings - REQUIRED-->
 
|{{#vardefine:app|bamtools}}
 
|{{#vardefine:app|bamtools}}
 
|{{#vardefine:url|https://github.com/pezmaster31/bamtools/wiki}}
 
|{{#vardefine:url|https://github.com/pezmaster31/bamtools/wiki}}
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|{{#vardefine:exe|}} <!--Present manual instructions for running the software -->
 
|{{#vardefine:exe|}} <!--Present manual instructions for running the software -->
 
|{{#vardefine:conf|}} <!--Enable config wiki page link - {{#vardefine:conf|1}} = ON/conf|}} = OFF-->
 
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<!--Modules-->
 
<!--Modules-->
==Required Modules==
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==Environment Modules==
[[Modules|modules documentation]]
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
===Serial===
 
*{{#var:app}}
 
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
==Additional tools==
 
==Additional tools==
 
We also provide small tools that depend on bamtools or are built against it within this module.
 
We also provide small tools that depend on bamtools or are built against it within this module.

Latest revision as of 18:02, 12 August 2022

Description

bamtools website  

BamTools is a project that provides both a C++ API and a command-line toolkit for reading, writing, and manipulating BAM (genome alignment) files.

Environment Modules

Run module spider bamtools to find out what environment modules are available for this application.

System Variables

  • HPC_BAMTOOLS_DIR - installation directory

Additional tools

We also provide small tools that depend on bamtools or are built against it within this module.

  • bamaddrg (2012-01-27 build against bamtools 0.9.4).