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Ampligraph website  

An Automated Phylogenomic Inference Pipeline for Bacterial and Archaeal Sequences.

Use AmpliGraph if you need to:

  • Discover new knowledge from an existing knowledge graph.
  • Complete large knowledge graphs with missing statements.
  • Generate stand-alone knowledge graph embeddings.
  • Develop and evaluate a new relational model.

Environment Modules

Run module spider Ampligraph to find out what environment modules are available for this application.

System Variables

  • HPC_AMPLIGRAPH_DIR - installation directory
  • HPC_AMPLIGRAPH_BIN - executable directory


If you publish research that uses Ampligraph you have to cite it as follows: @misc{ampligraph,

 author= {Luca Costabello and
          Sumit Pai and
          Chan Le Van and
          Rory McGrath and
          Nick McCarthy and
          Pedro Tabacof},
 title = Template:AmpliGraph: a Library for Representation Learning on Knowledge Graphs,
 month = mar,
 year  = 2019,
 doi   = {10.5281/zenodo.2595043},
 url   = {}