Difference between revisions of "ASHS"
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Revision as of 14:21, 8 October 2019
Description
ASHS is a software package for automatic segmentation of hippocampal subfields in MRI scans. ASHS requires a T1-weighted scan and an oblique coronal T2-weighted scan with high in-plane resolution. ASHS will automatically label main hippocampal subfields and medial temporal lobe subregions. ASHS is easy to train for other brain segmentation applications as well.
See ASHS Documentation for usage details.
Environment Modules
Run module spider ashs to find out what environment modules are available for this application.
System Variables
- HPC_{{#uppercase:ashs}}_DIR - installation directory
- HPC_ASHS_CONF - default configuration file
- HPC_ASHS_ATLAS - atlases directory tree
Additional Information
Atlas reference data is located in $ASHS_ATLAS directory tree.