Difference between revisions of "AMAS"

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m (Text replacement - "#uppercase" to "uc")
 
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[[Category:Software]][[Category:Biology]][[Category:NGS]]
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[[Category:Software]][[Category:Phylogenetics]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|amas}}
 
|{{#vardefine:app|amas}}
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<!--Modules-->
 
<!--Modules-->
==Required Modules==
+
==Environment Modules==
 
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
===Serial===
 
* {{#var:app}}
 
* gcc/5.2.0
 
<!--
 
===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
* intel
 
* openmpi
 
* {{#var:app}}
 
-->
 
 
==System Variables==
 
==System Variables==
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory

Latest revision as of 12:38, 12 August 2022

Description

amas website  

Alignment manipulation and summary statistics

Environment Modules

Run module spider amas to find out what environment modules are available for this application.

System Variables

  • HPC_AMAS_DIR - installation directory




Citation

If you publish research that uses amas you have to cite it as follows:

Borowiec, M.L. 2016. AMAS: a fast tool for alignment manipulation and computing of summary statistics. PeerJ 4:e1660.