Difference between revisions of "ABySS"
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Moskalenko (talk | contribs) m (Text replace - "]] {| <!--Main settings - REQUIRED-->" to "]] {|<!--Main settings - REQUIRED-->") |
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* {{#var:app}} | * {{#var:app}} | ||
===Parallel (MPI) === | ===Parallel (MPI) === | ||
| − | *intel | + | *intel/2016.0.109 |
| − | *openmpi | + | *openmpi/1.10.2 |
| − | * {{#var:app}} | + | * {{#var:app}}/1.9.0 |
==System Variables== | ==System Variables== | ||
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | * HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | ||
Revision as of 15:25, 4 August 2016
Description
ABySS is a de novo, parallel, paired-end sequence assembler that is designed for short reads. The single-processor version is useful for assembling genomes up to 100 Mbases in size. The parallel version is implemented using MPI and is capable of assembling larger genomes.
Required Modules
Serial
- abyss
Parallel (MPI)
- intel/2016.0.109
- openmpi/1.10.2
- abyss/1.9.0
System Variables
- HPC_{{#uppercase:abyss}}_DIR - installation directory