Samtools
Revision as of 19:43, 10 August 2012 by Moskalenko (talk | contribs)
Description
SAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments. SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.
Note: The Samtools 0.1.18 install includes the tabix and bgzip binaries from the Tabix-0.2.6 software.
Required Modules
Serial
- samtools
System Variables
- HPC_{{#uppercase:samtools}}_DIR - installation directory
- HPC_SAMTOOLS_BIN - executable directory