RepeatMasker
Revision as of 18:10, 10 August 2012 by Moskalenko (talk | contribs) (Text replace - "]] {| <!--Main settings - REQUIRED-->" to "]] {|<!--Main settings - REQUIRED-->")
|
|
Description
RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences. The output of the program is a detailed annotation of the repeats that are present in the query sequence as well as a modified version of the query sequence in which all the annotated repeats have been masked (default: replaced by Ns). On average, almost 50% of a human genomic DNA sequence currently will be masked by the program. Sequence comparisons in RepeatMasker are performed by one of several popular search engines including, cross_match, ABBlast/WUBlast, RMBlast and Decypher.
Available Versions
- 3.3.0
Required Modules
Serial
- repeatmasker