CAP3

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Description

cap3 website  

CAP3 is a sequence assembly program. See documentation at capdoc site.

Intel processor optimized versions of cap3 and formcon are installed at HPC.

Opteron optimized versions of these binaries are named cap3-opteron and formcon-opteron.

In addition, pcap binaries are also provided.

Required Modules

modules documentation

Serial

  • cap3

System Variables

  • HPC_{{#uppercase:cap3}}_DIR - installation directory
  • HPC_CAP3_BIN - location of the CAP3 executables directory
  • HPC_CAP3_DOC - location of the CAP3 docs directory
  • HPC_CAP3_EXAMPLE - location of the CAP3 examples directory




Retrieved from "https://help.rc.ufl.edu/mediawiki/index.php?title=CAP3&oldid=8688"