Bamtools
Revision as of 16:29, 10 August 2012 by Moskalenko (talk | contribs) (Text replace - "Usage policy" to "Usage Policy")
Description
BamTools is a project that provides both a C++ API and a command-line toolkit for reading, writing, and manipulating BAM (genome alignment) files.
Execution Environment and Modules
To use bamtools with the environment modules system at HPC the following commands are available:
Get module information for bamtools:
$module spider bamtools
Load the default application module:
$module load bamtools
The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:
- HPC_BAMTOOLS_DIR - directory where bamtools is located.
- HPC_BAMTOOLS_BIN - executable directory
- HPC_BAMTOOLS_INC - includes directory
Additional tools
We also provide small tools that depend on bamtools or are built against it within this module.
- bamaddrg (2012-01-27 build against bamtools 0.9.4).