Bismark
Revision as of 02:36, 10 August 2012 by Moskalenko (talk | contribs) (Text replace - "<!--Versions--> ==Available versions== .* <!--Modules-->" to "<!--Modules-->")
Description
Bismark is a bisulfite read mapper and methylation caller.
Execution Environment and Modules
To use bismark with the environment modules system at HPC the following commands are available:
Get module information for bismark:
$module spider bismark
Load the default application module:
$module load bismark
The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:
- HPC_BISMARK_DIR - directory where bismark is located.