BLASTDB

Both the command line BLAST and the Galaxy Framework at UF HPC use the same BLAST databases. We provide 3 recent monthly releases of the BLASTDB (blast databases). The current BLASTDB version is made available to the ncbi_blast tools via the BLASTDB environment variable. Currently provided databases are listed below. If you need a different database and would like to avoid using up your personal filespace quota please file a Support Request Ticket or contact the UF HPC Biological Computing Support.

Provided BLASTDB releases

• 2011-12
• 2012-01
• 2012-02

Provided BLASTDB databases

(Alphabetical listing)

2012-02:

• est
• est_human
• est_mouse
• st_others
• nr
• nt
• other_genomic
• refseq_genomic
• refseqgene
• refseq_protein
• refseq_rna
• swissprot
• wgs