Gmap
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Description
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GMAP: A Genomic Mapping and Alignment Program for mRNA and EST Sequences, and
GSNAP: Genomic Short-read Nucleotide Alignment Program
Template:App Location
Available versions
- 20070928 (used by PASA)
- 20120111 (default)
Running the application using modules
To use gmap with the environment modules system at HPC the following commands are available:
Get module information for gmap:
$module spider gmap
Load the default application module:
$module load gmap
The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:
- HPC_GMAP_DIR - directory where gmap is located.
- HPC_GMAP_BIN - executable directory.