Mtd
Description
MTD: Meta-Transcriptome Detector, is a software that has two sub-pipelines to jointly analyze of host transcriptome with its microbiome by using bulk RNA-seq and single-cell RNA-seq data, respectively. It supports comprehensive microbiome species, including viruses, bacteria, protozoa, fungi, plasmids, and vectors.
MTD enables simultaneous analyses of the microbiome and the host cell transcriptome in bulk and single-cell RNA-seq data.
- The correlation between the microbiome and the host transcriptome can be automatically analyzed.
- MTD has an extensive microbiome detection capacity, including viruses, bacteria, protozoa, fungi, plasmids, and vectors.
- Installation and use MTD is as easy as one command line without the requirement of administrator/root privilege.
- Decontamination function is enabled to eliminate the common contaminant microbes in the laboratory environment
Environment Modules
Run module spider mtd to find out what environment modules are available for this application.
System Variables
- HPC_MTD_DIR - installation directory
- HPC_MTD_BIN - executable directory
- MTDIR - executable directory alias