Emu

Description

emu website  

Emu: species-level taxonomic abundance for full-length 16S reads

Emu is a relative abundance estimator for 16S genomic sequences. The method is optimized for error-prone full-length reads, but can also be utilized for short-read data.

Environment Modules

Run module spider emu to find out what environment modules are available for this application.

System Variables

• HPC_EMU_DIR - installation directory
• HPC_EMU_BIN - executable directory
• EMU_DATABASE_DIR - database directory
• RDB_PREBUILT_DB - rdb prebuilt database
• SILVA_PREBUILT_DB - silva prebuilt database
• UNITE_FUNGI_PREBUILT_DB - unite-fungi prebuilt database
• UNITE_ALL_PREBUILT_DB - unite-all prebuilt database