Emu
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Description
Emu: species-level taxonomic abundance for full-length 16S reads
Emu is a relative abundance estimator for 16S genomic sequences. The method is optimized for error-prone full-length reads, but can also be utilized for short-read data.
Environment Modules
Run module spider emu to find out what environment modules are available for this application.
System Variables
- HPC_EMU_DIR - installation directory
- HPC_EMU_BIN - executable directory
- EMU_DATABASE_DIR - database directory
- EMU_PREBUILT_DB - emu prebuilt database
- RDB_PREBUILT_DB - rdb prebuilt database
- SILVA_PREBUILT_DB - silva prebuilt database
- UNITE_FUNGI_PREBUILT_DB - unite-fungi prebuilt database
- UNITE_ALL_PREBUILT_DB - unite-all prebuilt database