Emerald

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Description

emeraLD website  

DESCRIPTION Tools for rapid on-the-fly LD calculation 

   Exploits sparsity and haplotype structure to efficiently calculate LD
   Uses tabix indexes to support rapid querying of genomic regions
   Supports VCF (phased or unphased) and M3VCF formats
   Supports integration with Python and R

Environment Modules

Run module spider emeraLD to find out what environment modules are available for this application.

System Variables

  • HPC_EMERALD_DIR - installation directory
  • HPC_EMERALD_BIN - executable directory






Retrieved from "https://help.rc.ufl.edu/mediawiki/index.php?title=Emerald&oldid=28224"