Ampligraph

Description

Ampligraph website  

An Automated Phylogenomic Inference Pipeline for Bacterial and Archaeal Sequences.

Use AmpliGraph if you need to:

• Discover new knowledge from an existing knowledge graph.
• Complete large knowledge graphs with missing statements.
• Generate stand-alone knowledge graph embeddings.
• Develop and evaluate a new relational model.

Environment Modules

Run module spider Ampligraph to find out what environment modules are available for this application.

System Variables

• HPC_AMPLIGRAPH_DIR - installation directory
• HPC_AMPLIGRAPH_BIN - executable directory

Citation

If you publish research that uses Ampligraph you have to cite it as follows: @misc{ampligraph,

 author= {Luca Costabello and
          Sumit Pai and
          Chan Le Van and
          Rory McGrath and
          Nick McCarthy and
          Pedro Tabacof},
 title = Template:AmpliGraph: a Library for Representation Learning on Knowledge Graphs,
 month = mar,
 year  = 2019,
 doi   = {10.5281/zenodo.2595043},
 url   = {https://doi.org/10.5281/zenodo.2595043}