Ancestryhmm
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Description
A hidden Markov model approach for simultaneously estimating local ancestry and admixture time using next generation sequence data in samples of arbitrary ploidy.
Environment Modules
Run module spider ancestryhmm to find out what environment modules are available for this application.
System Variables
- HPC_ANCESTRYHMM_DIR - installation directory
- HPC_ANCESTRYHMM_BIN - executable directory
Citation
If you publish research that uses ancestryhmm you have to cite it as follows:
Corbett-Detig, R. and Nielsen, R., 2017. A hidden Markov model approach for simultaneously estimating local ancestry and admixture time using next generation sequence data in samples of arbitrary ploidy. PLoS genetics, 13(1), p.e1006529.