Srst2
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Description
This program is designed to take Illumina sequence data, a MLST database and/or a database of gene sequences (e.g. resistance genes, virulence genes, etc) and report the presence of STs and/or reference genes.
Environment Modules
Run module spider srst2 to find out what environment modules are available for this application.
System Variables
- HPC_SRST2_DIR - installation directory
Citation
If you publish research that uses srst2 you have to cite it as follows:
The peer-reviewed open-access paper is available in Genome Medicine: http://genomemedicine.com/content/6/11/90