Mapdamage
Revision as of 21:28, 16 September 2022 by Cabreraruizdiazj (talk | contribs) (Created page with "Category:SoftwareCategory:SequencingCategory:BiologyCategory:NGS {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|mapdamage}} |{{#vardefine:url|https://githu...")
Description
mapDamage2 is a computational framework written in Python3 and R, which tracks and quantifies DNA damage patterns among ancient DNA sequencing reads generated by Next-Generation Sequencing platforms.
Environment Modules
Run module spider mapdamage to find out what environment modules are available for this application.
System Variables
- HPC_MAPDAMAGE_DIR - installation directory
- HPC_MAPDAMAGE_BIN - executable directory
Citation
If you publish research that uses mapdamage you have to cite it as follows:
Jónsson H, Ginolhac A, Schubert M, Johnson P, Orlando L. {http://bioinformatics.oxfordjournals.org/content/early/2013/05/17/bioinformatics.btt193 mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters. Bioinformatics 23rd April 2013. doi: 10.1093/bioinformatics/btt193}