Miniasm
Revision as of 20:10, 18 August 2022 by Israel.herrera (talk | contribs)
Description
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a consensus step. It simply concatenates pieces of read sequences to generate the final unitig sequences. Thus the per-base error rate is similar to the raw input reads.
Environment Modules
Run module spider miniasm to find out what environment modules are available for this application.
System Variables
- HPC_MINIASM_DIR - installation directory
- HPC_MINIASM_BIN - executable directory