IAssembler

Description

iassembler website  
iAssembler is a standalone package to assemble ESTs generated using Sanger and/or Roche-454 pyrosequencing technologies into contigs. The pipeline gives much higher accuracy in EST assembly than other existing assemblers by employing an iterative assembly strategy and automated error corrections of mis-assemblies.

Environment Modules

Run module spider iassembler to find out what environment modules are available for this application.

System Variables

• HPC_IASSEMBLER_DIR - installation directory

Citation

If you publish research that uses iassembler you have to cite it as follows:

Zheng Y, Zhao L, Gao J, Fei Z. (2011) iAssembler: a package for de novo assembly of Roche-454/Sanger transcriptome sequences. BMC Bioinformatics 12:453