Ngs-bits
Revision as of 16:57, 10 June 2022 by Israel.herrera (talk | contribs)
Description
Short-read sequencing tools.
Main tools
- SeqPurge - A highly-sensitive adapter trimmer for paired-end short-read data (paper, poster from ECCB 2016 with more recent benchmarks).
- SampleCorrelation - Calculates the variant overlap and correlation of two VCF/BAM files.
- SampleGender - Determines sample gender based on a BAM file.
- PERsim - Paired-end read simulator for Illumina reads.
- CnvHunter - CNV detection from targeted resequencing data using non-matched control samples.
Environment Modules
Run module spider ngsbits to find out what environment modules are available for this application.
System Variables
- HPC_NGSBITS_DIR - installation directory