FastPlast
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[[Category::Phylogenetics]]
Description
Fast-Plast is a pipeline that leverages existing and novel programs to quickly assemble, orient, and verify whole chloroplast genome sequences. For most datasets with sufficient data, Fast-Plast is able to produce a full-length de novo chloroplast genome assembly in approximately 30 minutes with no user mediation. In addition to a chloroplast sequence, Fast-Plast identifies chloroplast genes present in the final assembly.
Environment Modules
Run module spider FastPlast to find out what environment modules are available for this application.
System Variables
- HPC_FASTPLAST_DIR - installation directory