Msprime

From UFRC
Revision as of 22:49, 8 September 2020 by Maxprok (talk | contribs) (Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|msprime}} |{{#vardefine:url|https://github.com/tskit-dev/msprime}} <!--CONFI...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigation Jump to search

Description

msprime website  

A reimplementation of Hudson's classical ms simulator for modern data sets.

Environment Modules

Run module spider msprime to find out what environment modules are available for this application.

System Variables

  • HPC_MSPRIME_DIR - installation directory
  • HPC_MSPRIME_BIN - executable directory




Citation

If you publish research that uses msprime you have to cite it as follows:

https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004842