Graftm
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Description
GraftM is a tool for finding genes of interest in metagenomes, metatranscriptomes, and whole genomes. Using modular gene packages, GraftM will search the provided sequences using hmmsearch (HMMER) and place the identified sequences into a pre-constructed phylogenetic tree. The provides fast, phylogenetically informed community profiles and genome annotations.
Environment Modules
Run module spider graftm to find out what environment modules are available for this application.
System Variables
- HPC_GRAFTM_DIR - installation directory
- HPC_GRAFTM_BIN - executable directory
Citation
If you publish research that uses graftm you have to cite it as follows: