NanoCount

Description

[/apps/nanocount/0.2.1/bin nanocount website]  

NanoCount estimates transcripts abundance from Oxford Nanopore direct-RNA sequencing datasets, using an expectation-maximization approach like RSEM, Kallisto, salmon, etc to handle the uncertainty of multi-mapping reads

Environment Modules

Run module spider nanocount to find out what environment modules are available for this application.

System Variables

• HPC_NANOCOUNT_DIR - installation directory
• HPC_NANOCOUNT_BIN - executable directory

Citation

If you publish research that uses nanocount you have to cite it as follows:

Adrien Leger. (2020, January 28). a-slide/NanoCount. Zenodo.