Popoolation
Revision as of 21:23, 6 December 2019 by Moskalenko (talk | contribs) (Text replacement - "#uppercase" to "uc")
Description
PoPoolation is a pipeline for analysing pooled next generation sequencing data. Currently PoPoolation allows to calculate Tajima’s Pi, Watterson’s Theta and Tajima’s D with a sliding window approach for chromosomes or for set of genes. One of the main challenges in population genomics is to identify regions of intererest on a genome wide scale. We believe that PoPoolation will greatly aid this task by allowing a fast and user friendly analysis of NGS data from DNA pools.
Environment Modules
Run module spider popoolation to find out what environment modules are available for this application.
System Variables
- HPC_POPOOLATION_DIR - installation directory
- HPC_POPOOLATION_BIN - executable directory