MetaVelvet
Revision as of 21:21, 6 December 2019 by Moskalenko (talk | contribs) (Text replacement - "#uppercase" to "uc")
Description
Velvet is a de novo genomic assembler specially designed for short read sequencing technologies, such as Solexa or 454 or SOLiD
MetaVelvet is a single-genome and de Bruijn-graph based assembler Velvet modified and extended for de novo metagenome assembly. The fundamental ideas are first decomposing de Bruijn graph constructed from mixed short reads into individual sub-graphs and second building scaffolds based on every decomposed de Bruijn sub-graph as isolate species genome.
Note that MetaVelvet is based on an older version of Velvet than those available on our system.
Required Modules
System Variables
- HPC_METAVELVET_DIR - Installation directory
- HPC_METAVELVET_BIN - Executable directory
Validation
- Validated 4/5/2018