CNV-Sim
Revision as of 21:06, 6 December 2019 by Moskalenko (talk | contribs) (Text replacement - "#uppercase" to "uc")
Description
In genomics, Copy Number Variations (CNVs) is a type of structural variation in a genome where sections of the genome are duplicated or deleted. The number of variations (duplications/deletions) varies between individuals in the human population.
The Copy Number Variation Simulator (CNV-Sim) is a simulation tool that extends the functionality of existing next-generation sequencing read simulators to introduce copy number variations in the generated reads. The resulting reads encompass amplifications as well as deletions according to a predefined list of variant regions.
Required Modules
Serial
- gcc/5.2.0
- cnv-sim
System Variables
- HPC_CNV-SIM_DIR - installation directory
- HPC_CNV-SIM_BIN - executable directory