MetaCompare

Description

metacompare website  

MetaCompare is a computational pipeline for prioritizing resistome risk by estimating the potential for ARGs to be disseminated into human pathogens from a given environmental sample based on metagenomic sequencing data.

Environment Modules

Run module spider metacompare to find out what environment modules are available for this application.

System Variables

• HPC_{{#uppercase:metacompare}}_DIR - installation directory
• HPC_{{#uppercase:metacompare}}_BIN - executable directory
• HPC_{{#uppercase:metacompare}}_DB - database directory

Citation

If you publish research that uses metacompare you have to cite it as follows:

Oh, M., Pruden, A., Chen, C., Heath, L. S., Xia, K., & Zhang, L. (2018). MetaCompare: A computational pipeline for prioritizing environmental resistome risk. FEMS microbiology ecology.