RaGOO

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Description

ragoo website  

A tool to order and orient genome assembly contigs via Minimap2 alignments to a reference genome.

Environment Modules

Run module spider ragoo to find out what environment modules are available for this application.

System Variables

  • HPC_{{#uppercase:ragoo}}_DIR - installation directory
  • HPC_{{#uppercase:ragoo}}_BIN - executable directory




Citation

If you publish research that uses ragoo you have to cite it as follows:

Alonge M, Soyk S, Ramakrishnan S, Wang X, Goodwin S, Sedlazeck FJ, Lippman ZB, Schatz MC: Fast and accurate reference-guided scaffolding of draft genomes. bioRxiv 2019.


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